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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17677002_17677147_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17677002 - 17677147
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCTCTTTCATC
Flanking Amino Acid:
TEAITYIVNKADLSLVFCDT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.5
0.71
0.8
81.7
28.7
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
63.8
0.42
1.7
73.34
38.7

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421