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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17677248_17680951_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17677248 - 17680951
Intron Length:
3704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TAATCACTGACT
Flanking Amino Acid:
IGIFAQNRPEWVIIEQGCYA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.3
0.84
0.8
84.2
30.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
53.2
0.18
2
75.51
40.4

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421