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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17681054_17682298_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17681054 - 17682298
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
QPYEWISYKEVSDRAEYVGS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.7
0.71
0.8
74.1
36.3
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421