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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17682869_17688951_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17682869 - 17688951
Intron Length:
6083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACCTTTTTAACT
Flanking Amino Acid:
DLAMQSVEVEGGEHARRSSL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
0.9
69.9
40.6
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
71.3
0.75
1.2
77.06
40.2

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421