Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17781960_17796429_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

17781960 - 17796429

Intron Length:

14470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGCAGAG

5'SS Class:

major

3'SS Sequence:

GGCGGGCGGGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGCCAT

U12 Branch Point Sequence:

CGGGGGCCATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.2

40.4

Major BPS

41.8

-0.5

1.5

43.9

48.6

Major PPT

38.3

-0.6

1.6

26.7

37.2

Minor 5ss

28.5

-2.5

3.5

47.6

Minor BPS

24.1

-1.8

2.1

32.52

37.3

Associated Gene:

Gene:

SLC25A4

Ensembl Gene ID:

ENSAPLG00000011236

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011699

17781893 - 17799265

17373