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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17797409_17797951_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17797409 - 17797951
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGTTCTTGATG
Flanking Amino Acid:
AYFGVYDTAKGMLPDPKNVH
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.9
0.52
1.1
69
40.8
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
69
0.45
1.3
69.4
38.8

Associated Gene:

Gene:
SLC25A4
Ensembl Gene ID:
ENSAPLG00000011236
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036578
17795937 - 17798577
2641
ENSAPLT00000011699
17781893 - 17799265
17373