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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17813382_17823523_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17813382 - 17823523
Intron Length:
10142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCCATTTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAAGT
Flanking Amino Acid:
DAMDLNQLLKAFLQLEKKEQ
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.1
0.39
1.1
67
38
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
75
0.86
1.6
88.23
36.9

Associated Gene:

Gene:
CFAP97
Ensembl Gene ID:
ENSAPLG00000011187
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039607
17804710 - 17824581
19872