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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17823357_17823523_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17823357 - 17823523
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
CGTATGAAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTCTTTGAATT
Flanking Amino Acid:
DAMDLNQLLKVLLVQWKEEA
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
54.7
0.11
1.1
48
42.9
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
54.8
0.23
1.4
67.89
37.4

Associated Gene:

Gene:
CFAP97
Ensembl Gene ID:
ENSAPLG00000011187
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029190
17805251 - 17824581
19331
ENSAPLT00000011645
17803613 - 17824581
20969