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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17838631_17843693_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17838631 - 17843693
Intron Length:
5063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
CTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
LESGIKMKMQSNWPGSCHDS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011461
17838589 - 17916373
77785