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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17842098_17843693_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17842098 - 17843693
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
MWRKNDKSNWPGSCHDS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047301
17841184 - 17916373
75190