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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17843779_17851837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17843779 - 17851837
Intron Length:
8059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGGTACTGATT
Flanking Amino Acid:
SHNMDKALKEVFDYSYRDYI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
91
0.92
0.6
89
20
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
44.2
-0.3
1.9
63.89
41

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047301
17841184 - 17916373
75190
ENSAPLT00000011461
17838589 - 17916373
77785