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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17890370_17891950_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17890370 - 17891950
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAA
5'SS Class:
major
3'SS Sequence:
CCTTGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTCCTTGCTT
Flanking Amino Acid:
SVECLKSANKAEIPQLVSEI
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.63
0.8
72.7
32
Minor 5ss
25.9
-2.8
3
30.2
43.1
Minor BPS
46.2
-0.2
3.5
74.27
43.5

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047301
17841184 - 17916373
75190
ENSAPLT00000011461
17838589 - 17916373
77785