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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17892227_17896113_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17892227 - 17896113
Intron Length:
3887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CATTCTCTATTC
Flanking Amino Acid:
RLAPEDKDEASHGCEETTEE
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
38
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.3
0.64
0.7
77.3
30.2
Minor 5ss
29.6
-2.3
2.8
36.4
40.6
Minor BPS
48.1
-0.1
1.9
59.72
40

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047301
17841184 - 17916373
75190
ENSAPLT00000011461
17838589 - 17916373
77785