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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17899800_17902767_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17899800 - 17902767
Intron Length:
2968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCGCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
CTATCTGTATTC
Flanking Amino Acid:
MWKAFIISGEVLEENGEQVP
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
54.1
0.09
1
51.7
31.6
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
46.1
-0.3
2.2
58.17
41.7

Associated Gene:

Gene:
SNX25
Ensembl Gene ID:
ENSAPLG00000010977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047301
17841184 - 17916373
75190
ENSAPLT00000011461
17838589 - 17916373
77785