Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17903615_17905888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17903615 - 17905888

Intron Length:

2274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

ATTTCTTTCATA

Flanking Amino Acid:

SKNQLNNFLQKLLSDERLCQ

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

79.5

0.73

0.9

36.9

Major PPT

0.7

76.8

31.2

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

66.4

0.51

1.7

77.18

34.1

Associated Gene:

Gene:

SNX25

Ensembl Gene ID:

ENSAPLG00000010977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047301

17841184 - 17916373

75190

ENSAPLT00000011461

17838589 - 17916373

77785