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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17922184_17924974_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17922184 - 17924974
Intron Length:
2791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGTTA
5'SS Class:
major
3'SS Sequence:
AATTCTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GTTATCTAACCT
Flanking Amino Acid:
FYSTAATIAMRTTENDDIDM
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
0.9
74.2
32
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
70.1
0.45
0.9
62.9
37.4
Minor 5ss
34.2
-1.8
3.4
46.2
49.1
Minor BPS
49.8
0.06
2
72.79
44.1

Associated Gene:

Gene:
LRP2BP
Ensembl Gene ID:
ENSAPLG00000010869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011315
17920149 - 17929388
9240