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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17925199_17925724_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17925199 - 17925724
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCC
5'SS Class:
major
3'SS Sequence:
GCTTCTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAC
U12 Branch Point Sequence:
ATACACAGAAAA
Flanking Amino Acid:
SMSALKDLRKSFFWHSEACG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.8
40.7
Major BPS
56.2
0.16
1
64.7
31
Major PPT
74.2
0.55
0.9
73
37.3
Minor 5ss
31.4
-2.1
3.3
42.6
44.4
Minor BPS
42.4
-0.5
1.8
53.55
36.9

Associated Gene:

Gene:
LRP2BP
Ensembl Gene ID:
ENSAPLG00000010869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011315
17920149 - 17929388
9240