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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17926055_17927058_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17926055 - 17927058
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
ACCTCCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
AATGATTGAAAT
Flanking Amino Acid:
YDGLGTNEDPEKGVEYMKKI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
75
0.56
0.8
69.3
30.5
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
46.5
-0.1
1.7
63.01
40.5

Associated Gene:

Gene:
LRP2BP
Ensembl Gene ID:
ENSAPLG00000010869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011315
17920149 - 17929388
9240