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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17935267_17936098_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17935267 - 17936098
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGTAGTTTAAAT
Flanking Amino Acid:
GEDLHVILEKGWCGWKGPDF
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77
0.61
1
73.1
42.1
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
50.4
0.09
1.9
69.26
41.3

Associated Gene:

Gene:
UFSP2
Ensembl Gene ID:
ENSAPLG00000010608
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011066
17935180 - 17945370
10191