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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17936224_17936846_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17936224 - 17936846
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
FKTEGTPIMIGGGVLAHTIL
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.1
0.74
0.7
81.9
28.4
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
UFSP2
Ensembl Gene ID:
ENSAPLG00000010608
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011066
17935180 - 17945370
10191