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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17943036_17943337_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17943036 - 17943337
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TTATTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTGTCTTTATTC
Flanking Amino Acid:
KKKDKKLQDTQQIINIDLML
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.7
37.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.4
0.82
0.7
81.6
30.1
Minor 5ss
43.8
-0.7
3.1
61.4
43.6
Minor BPS
60.4
0.31
1.6
66.52
39.9

Associated Gene:

Gene:
UFSP2
Ensembl Gene ID:
ENSAPLG00000010608
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011066
17935180 - 17945370
10191