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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17944239_17945184_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17944239 - 17945184
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATAACTTATTT
Flanking Amino Acid:
GGRTVFRRVSVNMEAMDILF
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
55.2
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
26.1
-2.7
3.1
33.6
41.9
Minor BPS
51.4
0.12
1.8
69.76
40.8

Associated Gene:

Gene:
UFSP2
Ensembl Gene ID:
ENSAPLG00000010608
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011066
17935180 - 17945370
10191