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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17948151_17950676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17948151 - 17950676
Intron Length:
2526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATGTATTAATT
Flanking Amino Acid:
AFLPSNGDKLPCGKGTYYGT
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
82.1
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.2
0.75
0.8
82.1
34.6
Minor 5ss
43.5
-0.7
2.9
65.1
39.1
Minor BPS
56.8
0.29
1.7
72.26
38.8

Associated Gene:

Gene:
C4orf47
Ensembl Gene ID:
ENSAPLG00000010408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010843
17946625 - 17956492
9868