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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17950978_17952028_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17950978 - 17952028
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATATTCTTGATT
Flanking Amino Acid:
GYELEKLIAKKAREEHKRLV
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
72.4
0.79
1.1
81.38
33.9

Associated Gene:

Gene:
C4orf47
Ensembl Gene ID:
ENSAPLG00000010408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010843
17946625 - 17956492
9868