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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17954510_17956328_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17954510 - 17956328
Intron Length:
1819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTACATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCACTCTTAATT
Flanking Amino Acid:
VTSIITLNVTRSINANNYKT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.5
0.62
0.9
67.6
42.7
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
70.5
0.72
1.2
77.74
38.9

Associated Gene:

Gene:
C4orf47
Ensembl Gene ID:
ENSAPLG00000010408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010843
17946625 - 17956492
9868