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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17977319_17978424_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17977319 - 17978424
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTTAAT
5'SS Class:
major
3'SS Sequence:
TTTTGGTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTGTGCTTAACA
Flanking Amino Acid:
KVLQNLVSEEDGRPVGTRSV
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75.9
35
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.8
0.74
0.9
80.5
37
Minor 5ss
30.6
-2.2
3
41.6
45
Minor BPS
67.8
0.55
1.8
74.81
43.1

Associated Gene:

Gene:
PDLIM3
Ensembl Gene ID:
ENSAPLG00000009922
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010349
17976144 - 17997384
21241
ENSAPLT00000019244
17976144 - 17997384
21241