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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17981794_17985501_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17981794 - 17985501
Intron Length:
3708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCAATTAACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTTTCTGCAATC
Flanking Amino Acid:
LRSLIPNSSQNGCSTPSGID
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
57.9
0.18
1
50.6
41.6
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
48.8
-0.1
2.2
65.76
40.9

Associated Gene:

Gene:
PDLIM3
Ensembl Gene ID:
ENSAPLG00000009922
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019244
17976144 - 17997384
21241