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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17985064_17985501_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17985064 - 17985501
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACC
Flanking Amino Acid:
LRSLIPNSSQKISTTLNTGI
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.8
0.81
0.8
79.7
32.4
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
71.2
0.64
1.2
75.38
34.7

Associated Gene:

Gene:
PDLIM3
Ensembl Gene ID:
ENSAPLG00000009922
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030109
17981699 - 17997384
15686