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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17985064_17991104_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17985064 - 17991104
Intron Length:
6041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACC
Flanking Amino Acid:
FKINLEAEPQDINYFEHRHN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.8
0.81
0.8
79.7
32.4
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
71.2
0.64
1.2
75.38
34.7

Associated Gene:

Gene:
PDLIM3
Ensembl Gene ID:
ENSAPLG00000009922
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010349
17976144 - 17997384
21241