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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17991190_17992911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17991190 - 17992911
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTCAAGTTAATT
Flanking Amino Acid:
AAHQLCLRIERKETKLWSPQ
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
84.4
0.77
0.7
77.7
31.1
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
49.7
0.05
2.2
73.4
43.7

Associated Gene:

Gene:
PDLIM3
Ensembl Gene ID:
ENSAPLG00000009922
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030109
17981699 - 17997384
15686
ENSAPLT00000019244
17976144 - 17997384
21241
ENSAPLT00000010349
17976144 - 17997384
21241