About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18018672_18029417_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18018672 - 18029417
Intron Length:
10746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTATTACAT
Flanking Amino Acid:
DRIHHLSSSKPQRPVLAHEN
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
78.2
34.5
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
50.5
0.09
2
73.71
43.1

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000042587
18013203 - 18087035
73833
ENSAPLT00000009481
18013203 - 18087035
73833
ENSAPLT00000037767
18013203 - 18087035
73833