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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18025533_18029417_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18025533 - 18029417
Intron Length:
3885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
DRIHHLSSSKLPSQALSPPP
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.61
1
78.7
33.4
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038670
18024732 - 18092512
67781