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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18031754_18033102_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18031754 - 18033102
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GAATCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACATCTTTAAAT
Flanking Amino Acid:
AVYDFKAQTSKELSFKKGDT
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.1
0.43
1
61.1
44.2
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
68.7
0.67
1.4
76.48
39.9

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000038670
18024732 - 18092512
67781
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000037767
18013203 - 18087035
73833
ENSAPLT00000009481
18013203 - 18087035
73833
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000032798
18026847 - 18087035
60189
ENSAPLT00000042587
18013203 - 18087035
73833