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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18040511_18041842_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18040511 - 18041842
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTGCTTATTT
Flanking Amino Acid:
STDRGLDRPSSSASTASDYR
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.7
0.71
0.8
77.4
31.2
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
53.8
0.2
2
72.6
44.8

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000038670
18024732 - 18092512
67781
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000037767
18013203 - 18087035
73833
ENSAPLT00000009481
18013203 - 18087035
73833
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000032798
18026847 - 18087035
60189
ENSAPLT00000042587
18013203 - 18087035
73833