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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18041896_18056766_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18041896 - 18056766
Intron Length:
14871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
KSSILEHERPTSLYHHSSTD
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.9
34.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009481
18013203 - 18087035
73833
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000032798
18026847 - 18087035
60189
ENSAPLT00000042587
18013203 - 18087035
73833
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000038670
18024732 - 18092512
67781
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000037767
18013203 - 18087035
73833