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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18059687_18061778_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18059687 - 18061778
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
FKQIHMVHKPGSYSPSFSAQ
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
77.1
37.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
1
74.7
40
Minor 5ss
36.2
-1.6
2.6
40.8
39.1
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042587
18013203 - 18087035
73833