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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18069597_18073621_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18069597 - 18073621
Intron Length:
4025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAATTATC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTGGTTTAATG
Flanking Amino Acid:
TLTNTAATSHAQITVNGNSG
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
80.1
32.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.8
0.81
0.7
84.9
30
Minor 5ss
42.8
-0.8
2.8
59.5
38
Minor BPS
51.5
-0
1.9
59.22
43.5

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000032798
18026847 - 18087035
60189
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000042587
18013203 - 18087035
73833
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000037767
18013203 - 18087035
73833