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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18069597_18074065_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18069597 - 18074065
Intron Length:
4469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTGGTTTAATG
Flanking Amino Acid:
NQKVTAPVMEAQITVNGNSG
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.8
0.81
0.7
84.9
30
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
51.5
-0
1.9
59.22
43.5

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038670
18024732 - 18092512
67781