About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18082703_18083663_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18082703 - 18083663
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCAAATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
CTTTTGGCAAAT
Flanking Amino Acid:
NLQDKKSPTQAPLPPPRKES
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
51.7
0.04
1.2
55.7
42.9
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
39.8
-0.6
2.6
64.47
46

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038670
18024732 - 18092512
67781
ENSAPLT00000037767
18013203 - 18087035
73833
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000017941
18013203 - 18092472
79270
ENSAPLT00000042587
18013203 - 18087035
73833