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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18084817_18086839_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18084817 - 18086839
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTAACAT
Flanking Amino Acid:
VQSSPNLLASGSDSQSPDSA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.8
39.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.2
0.88
0.7
88.9
28.2
Minor 5ss
35.5
-1.6
3.3
46.5
48.8
Minor BPS
49.8
0.07
2
73.75
43

Associated Gene:

Gene:
SORBS2
Ensembl Gene ID:
ENSAPLG00000009037
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031809
18013203 - 18087035
73833
ENSAPLT00000042587
18013203 - 18087035
73833
ENSAPLT00000009481
18013203 - 18087035
73833
ENSAPLT00000037767
18013203 - 18087035
73833
ENSAPLT00000035752
18013203 - 18092472
79270
ENSAPLT00000032798
18026847 - 18087035
60189