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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18230216_18231845_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18230216 - 18231845
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAATTTGTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.5
0.82
0.8
80.9
31
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
48.8
-0.2
2
56.34
39.8

Associated Gene:

Gene:
TLR3
Ensembl Gene ID:
ENSAPLG00000008976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033785
18229435 - 18237536
8102