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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18237533_18238775_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18237533 - 18238775
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAATGTT
5'SS Class:
major
3'SS Sequence:
CTGTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCATCTCATCT
Flanking Amino Acid:
VMALKSNSKARLSDKFSLRA
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
75
34.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.5
0.82
0.8
84.4
30.5
Minor 5ss
33
-1.9
3.5
49.3
47
Minor BPS
50.8
0.1
1.9
72.46
44.4

Associated Gene:

Gene:
TLR3
Ensembl Gene ID:
ENSAPLG00000008976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009346
18231846 - 18238836
6991