About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18261572_18264308_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18261572 - 18264308
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATTGGA
5'SS Class:
major
3'SS Sequence:
TTGCTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTGCTTTTACT
Flanking Amino Acid:
SEVFDHIWSNVHRFSSNFCS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
67.3
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.3
0.57
0.9
70.6
39.9
Minor 5ss
34.6
-1.8
3.2
44.7
43.4
Minor BPS
63.7
0.51
1.7
80.6
41.3

Associated Gene:

Gene:
FAM149A
Ensembl Gene ID:
ENSAPLG00000008657
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035974
18257781 - 18267163
9383