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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18261627_18263117_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18261627 - 18263117
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
TTTTATTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
IKKNWENNITEDKRVEKLKA
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.9
0.56
1.1
73.2
41.7
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
FAM149A
Ensembl Gene ID:
ENSAPLG00000008657
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009018
18257781 - 18267163
9383