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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18275563_18276784_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18275563 - 18276784
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGTTTTCTGACA
Flanking Amino Acid:
TVLYHPDSVEVILSSSKHIE
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
79.8
0.67
1
76.5
37.7
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
57.6
0.23
1.6
71.22
34.4

Associated Gene:

Gene:
CYP4V2
Ensembl Gene ID:
ENSAPLG00000007869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008204
18273647 - 18287126
13480