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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18276871_18278531_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18276871 - 18278531
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
GTCAATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGAGTTTTAACC
Flanking Amino Acid:
HPWLGTGLLTSTGDKWRSRR
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.9
0.58
1
68.9
41.5
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
57.6
0.22
1.4
60.06
39.1

Associated Gene:

Gene:
CYP4V2
Ensembl Gene ID:
ENSAPLG00000007869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008204
18273647 - 18287126
13480