Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18302615_18302702_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18302615 - 18302702

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCATTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TCATTTTTACAG

Flanking Amino Acid:

GLLNCRRYFPACNSRTYVHM

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

88.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

84.6

0.78

0.8

32.9

Minor 5ss

37.5

-1.4

2.8

48.3

41.8

Minor BPS

48.2

-0.2

1.7

52.29

42.8

Associated Gene:

Gene:

F11

Ensembl Gene ID:

ENSAPLG00000007257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018231

18294433 - 18308211

13779

ENSAPLT00000007554

18294433 - 18309243

14811