Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18306137_18307431_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18306137 - 18307431

Intron Length:

1295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGATA

5'SS Class:

major

3'SS Sequence:

ACCTATTGCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

CTTGTCTGATCA

Flanking Amino Acid:

VIGWGYRKERGLVEDILQKV

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

72.2

38.9

Major BPS

0.57

1.2

41.2

Major PPT

0.27

0.9

56.8

37.9

Minor 5ss

34.1

-1.8

3.5

48.2

47.5

Minor BPS

49.1

-0

1.8

63.26

43.4

Associated Gene:

Gene:

F11

Ensembl Gene ID:

ENSAPLG00000007257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018231

18294433 - 18308211

13779

ENSAPLT00000007554

18294433 - 18309243

14811