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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18307572_18309086_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18307572 - 18309086
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTTGTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TCTTTTGTGACA
Flanking Amino Acid:
YDEGGRDACKGDSGGPLSCK
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
74
0.54
1
68.9
41.2
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
52.9
0.08
2
68.82
38.3

Associated Gene:

Gene:
F11
Ensembl Gene ID:
ENSAPLG00000007257
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007554
18294433 - 18309243
14811