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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18334852_18336066_F

Intron Information:

Intron Rank:
149750
Intron Class:
major
Intron Phase:
Intron Coordinates:
18334852 - 18336066
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATAATG
5'SS Class:
major
3'SS Sequence:
GATTAACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCCTGATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
68.3
42.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
68.6
0.42
1
63.9
42.4
Minor 5ss
36.7
-1.5
3
41.5
44.7
Minor BPS
57.7
0.32
2.1
76.66
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030569
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045781
18334234 - 18338202
3969